Publications

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2020

Panagiotou S, Miedema R, Sidiropoulos H, Smaragdos G, Strydis C, Soudris D

A novel simulator for extended Hodgkin-Huxley neural network Conference

BIBE2020, IEEE, 2020.

BibTeX | Tags: BrainFrame

Miedema R, Smaragdos G, Negrello M, Al-Ars Z, Möller M, Strydis C

flexHH: A Flexible Hardware Library for Hodgkin-Huxley-Based Neural Simulations Journal Article

IEEE Access, 8 , 2020.

Links | BibTeX | Tags: BrainFrame

Garcia-Ramirez R, Chacón-Rodríguez A, Strydis C, Rimolo-Donadio R

Pre-Synthesis Evaluation of Digital Bus Micro-Architectures Conference

Conference on PhD Research in Microelectronics and Electronics in Latin America (PRIME-LA), IEEE, 2020.

Links | BibTeX | Tags: BrainFrame

Miedema R, Smaragdos G, Negrello M, Al-Ars Z, Möller M, Strydis C

Synthesis-Free, Flexible and Fast Hardware Library for Biophysically Plausible Neurosimulations - POSTER Conference

International Symposium on Field-Programmable Gate Arrays , ACM/SIGDA 2020.

Abstract | Links | BibTeX | Tags: BrainFrame

2019

van der Vlag MA, Smaragdos G, Al-Ars Z, Strydis C

Exploring Complex Brain-Simulation Workloads on Multi-GPU Deployments Journal Article

ACM Transactions on Architecture and Code Optimization (TACO), 16 (4), 2019.

Abstract | Links | BibTeX | Tags: BrainFrame

Neofytou A, Chatzikonstantis G, Magkanaris I, Smaragdos G, Strydis C, Soudris D

GPU Implementation of Neural-Network Simulations based on Adaptive-Exponential Models Conference

19th International Conference on Bioinformatics and Bioengineering (BIBE) , IEEE 2019.

Abstract | Links | BibTeX | Tags: BrainFrame

Alfaro-Badilla K, Arroyo-Romero A, Salazar-García C, Vega LGL, Espinoza-González J, Hernández- Castro F, Chacón-Rodríguez A, Smaragdos G, Strydis C

Improving the Simulation of Biologically Accurate Neural Networks Using Data Flow HLS Transformations on Heterogeneous SoC-FPGA Platforms Conference

CARLA 2019, Springer, 2019.

Abstract | Links | BibTeX | Tags: BrainFrame

Alfaro-Badilla K, Chacón-Rodríguez A, Smaragdos G, Strydis C, Arroyo-Romero A, Espinoza-González J, Salazar-García C

Prototyping a Biologically Plausible Neuron Model on a Heterogeneous CPU-FPGA Board Conference

IEEE 10th Latin American Symposium on Circuits & Systems (LASCAS), 2019.

Links | BibTeX | Tags: BrainFrame

Chatzikonstantis G, Sidiropoulos H, Strydis C, Negrello M, Smaragdos G, De Zeeuw CI, Soudris D

Multinode implementation of an extended Hodgkin–Huxley simulator Journal Article

Elsevier Neuroscomputing, 2019.

Links | BibTeX | Tags: Brain Dynamics, BrainFrame

2018

Sidiropoulos H, Chatzikonstantis G, Soudris D, Strydis C

The VINEYARD Framework for Heterogeneous Cloud Applications: The BrainFrame Case Conference

DASIP 2018, 2018.

Links | BibTeX | Tags: BrainFrame

Zjajo A, Hofmann J, Christiaanse GJ, van Eijk M, Smaragdos G, Strydis C, de Graaf A, Galuzzi C, van Leuken R

A Real-Time Reconfigurable Multichip Architecture for Large-Scale Biophysically Accurate Neuron Simulation Journal Article

IEEE transactions on biomedical circuits and systems, 2018.

Links | BibTeX | Tags: BrainFrame

2017

Smaragdos G, Chatzikonstantis G, Kukreja R, Sidiropoulos H, Rodopoulos D, Sourdis I, Al-Ars Z, Kachris C, Soudris D, De Zeeuw CI, Strydis C

BrainFrame: A node-level heterogeneous accelerator platform for neuron simulations Journal Article

IOP Journal of Neural Engineering, 2017.

Links | BibTeX | Tags: BrainFrame

Chatzikonstantis G, Jiménez D, Meneses E, Strydis C, Sidiropoulos H, Soudris D

From Knights Corner to Landing: a Case Study Based on a Hodgkin-Huxley Neuron Simulator Conference

International Conference on High Performance Computing, 2017.

Links | BibTeX | Tags: BrainFrame

Stamoulias I, Moller M, Miedema R, Strydis C, Kachris C, Soudris D

High-Performance Hardware Accelerators for Solving Ordinary Differential Equations Proceeding

Proceedings of the 8th International Symposium on Highly Efficient Accelerators and Reconfigurable Technologies, 2017.

Links | BibTeX | Tags: BrainFrame

Chatzikonstantis G, Rodopoulos D, Strydis C, De Zeeuw CI, Soudris D

Optimizing Extended Hodgkin-Huxley Neuron Model Simulations for a Xeon/Xeon Phi Node Journal Article

IEEE Transactions on Parallel and Distributed Systems, 2017.

Links | BibTeX | Tags: BrainFrame

2016

Theodoropoulos D, Chrysos G, Koidis I, Charitopoulos G, Pissadakis E, Varikos A, Pnevmatikatos D, Smaragdos G, Strydis C, Zervos N

mCluster: A Software Framework for Portable Device-Based Volunteer Computing Conference

16th International Symposium on Cluster, Cloud and Grid Computing (CCGrid 2016), 2016.

Links | BibTeX | Tags: BrainFrame

Kachris C, Soudris D, Gaydadjiev G, Nguyen H, Nikolopoulos DS, Bilas A, Morgan N, Strydis C, Tsalidis C, Balafas J, Jimenez-Peris R, Almeida A

The VINEYARD project: Versatile integrated accelerator-based heterogeneous data centres Conference

MOCAST 2016, 2016.

Links | BibTeX | Tags: BrainFrame

Smaragdos G, Chatzikonstantis G, Nomikou S, Rodopoulos D, Sourdis I, Soudris D, De Zeeuw CI, Strydis C

Performance Analysis of Accelerated Biophysically-Meaningful Neuron Simulations Conference

International Symposium on Performance Analysis of Systems and Software, 2016.

Links | BibTeX | Tags: BrainFrame

Chatzikonstantis G, Rodopoulos D, Nomikou S, Strydis C, De Zeeuw CI, Soudris D

First Impressions from Detailed Brain Model Simulations on a Xeon-Xeon Phi Node Conference

ACM International Conference on Computing Frontiers 2016, 2016.

Links | BibTeX | Tags: BrainFrame

Kokolis A, Mavrogiannis A, Rodopoulos D, Strydis C, Soudris D

Runtime Interval Optimization and Dependable Performance for Application-Level Checkpointing Conference

DATE 2016, 2016.

Links | BibTeX | Tags: BrainFrame

Kachris C, Soudris D, Gaydadjiev G, Nguyen H, Nikolopoulos DS, Bilas A, Morgan N, Strydis C, Tsalidis C, Balafas J, Jimenez-Peris R, Almeida A

The VINEYARD approach: Versatile, Integrated, Accelerator-based, Heterogeneous Data Centres Conference

ARC 2016, 2016.

Links | BibTeX | Tags: BrainFrame

2015

Nguyen HAD, Al-Ars Z, Smaragdos G, Strydis C

Accelerating complex brain-model simulations on GPU platforms Conference

Design, Automation, and Test in Europe, DATE 2015, 2015.

Links | BibTeX | Tags: BrainFrame

2014

van Eijk M, Galuzzi C, Zjajo A, Smaragdos G, Strydis C, van Leuken R

ESL Design of Customizable Real-Time Neuron Networks Conference

IEEE Biomedical Circuits and Systems Conference (BIOCAS 2014), 2014.

Links | BibTeX | Tags: BrainFrame

Rodopoulos D, Chatzikonstantis G, Pantelopoulos A, Soudris D, De Zeeuw CI, Strydis C

Optimal Mapping of Inferior Olive Neuron Simulations on the Single-Chip Cloud Computer Conference

International Conference on Embedded Computer Systems: Architectures, Modeling, and Simulation (SAMOS XIV), 2014.

Links | BibTeX | Tags: BrainFrame

Smaragdos G, Davies C, Strydis C, Sourdis I, Ciobanu C, Mencer O, De Zeeuw CI

Real-Time Olivary Neuron Simulations on Dataflow Computing Machines Conference

International Supercomputing Conference (ISC), 2014.

Links | BibTeX | Tags: BrainFrame

Sourdis I, Strydis C, Armato A, Bouganis CS, Falsafi B, Gaydadjiev GN, Isaza S, Malek A, Mariani R, Pradhan DK, Rauwerda G, Seepers RM, Shafik RA, Smaragdos G, Theodoropoulos D, Tzilis S, Vavouras M, Pagliarini S, Pnevmatikatos D

DeSyRe: On-Demand Adaptive and Reconfigurable Fault-Tolerant SoCs Conference

10th International Symposium on Applied Reconfigurable Computing (ARC), 2014.

Links | BibTeX | Tags: BrainFrame, SIMS

Smaragdos G, Isaza S, Van Eijk M, Sourdis I, Strydis C

FPGA-based Biophysically-Meaningful Modeling of Olivocerebellar Neurons Conference

22nd ACM/SIGDA International Symposium on Field-Programmable Gate Arrays (FPGA), 2014.

Links | BibTeX | Tags: BrainFrame

2013

Sourdis I, Strydis C, Armato A, Bouganis CS, Falsafi B, Gaydadjiev G, Isaza S, Malek A, Mariani R, Pnevmatikatos DN, Pradhan DK, Rauwerda G, Seepers R, Shafik RK, Sunesen K, Theodoropoulos D, Tzilis S, Vavouras M

DeSyRe: on-Demand System Reliability Journal Article

Elsevier Microprocessors and Microsystems, Special Issue on European Projects in Embedded System Design: EPESD2012, 2013.

Links | BibTeX | Tags: BrainFrame, SIMS

2012

Sourdis I, Strydis C, Bouganis CS, Falsafi B, Gaydadjiev GN, Malek A, Mariani R, Pnevmatikatos DN, Pradhan DK, Rauwerda G, Sunesen K, Tzilis S

The DeSyRe project: on-Demand System Reliability Conference

15th EUROMICRO Conference on Digital System Design (DSD), 2012.

Links | BibTeX | Tags: BrainFrame, SIMS