Publications

109 entries « 1 of 3 »

2024

Brown M, Generowicz BS, Dijkhuizen S, Koekkoek SKE, Strydis C, Bosch JG, Arvanitis P, Springeling G, Leus G, De Zeeuw CI, Kruizinga P

Four-dimensional computational ultrasound imaging of brain hemodynamics Bachelor Thesis

2024.

Links | BibTeX | Tags: CUBE

2023

Betting JLF, De Zeeuw CI, Strydis C

Oikonomos-II: A Reinforcement-Learning, Resource-Recommendation System for Cloud HPC Conference

IEEE 30th International Conference on High Performance Computing, Data, and Analytics (HiPC), 2023.

Links | BibTeX | Tags: BrainFrame

Betting JLF, Liakopoulos D, Engelen M, Strydis C

Oikonomos: An Opportunistic, Deep-Learning, Resource-Recommendation System for Cloud HPC Conference

2023 IEEE 34th International Conference on Application-specific Systems, Architectures and Processors (ASAP), 2023.

Links | BibTeX | Tags: BrainFrame

2022

Bauer S, van Wingerden N, Jacobs T, van der Horst A, Zhai P, Betting JLF, Strydis C, White JJ, De Zeeuw CI, Romano V

Purkinje Cell Activity Resonation Generates Rhythmic Behaviors at the Preferred Frequency of 8 Hz Journal Article

In: Biomedicines, vol. 10, no. 8, 2022.

Links | BibTeX | Tags: Other

Siddiqi MA, Hahn G, Hamdioui S, Serdijn WA, Strydis C

Improving the Security of the IEEE 802.15.6 Standard for Medical BANs Journal Article

In: IEEE Access , no. 10, pp. 62953 - 62975, 2022.

Links | BibTeX | Tags: SIMS

Panagiotou S, Sidiropoulos H, Soudris D, Negrello M, Strydis C

EDEN: A High-Performance, General-Purpose, NeuroML-Based Neural Simulator Journal Article

In: Frontiers in Neuroinformatics, 2022.

Links | BibTeX | Tags: Brain Dynamics, BrainFrame

2021

Arvanitis P, Betting JLF, Al-Ars Z, Bosman LWJ, Strydis C

WhiskEras 2.0: Fast and Accurate Whisker Tracking in Rodents Conference

SAMOS XXI, IEEE IEEE, 2021.

Links | BibTeX | Tags: Other

Siddiqi MA, Beurskens RHSH, Kruizinga P, De Zeeuw CI, Strydis C

Securing Implantable Medical Devices Using Ultrasound Waves Journal Article

In: IEEE Access, vol. 9, pp. 80170 - 80182, 2021.

Links | BibTeX | Tags: SIMS

Salazar-García C, García-Ramírez R, Rímolo-Donadío R, Strydis C, Chacón-Rodríguez A

PlasticNet+: Extending Multi-FPGA Interconnect Architecture via Gigabit Transceivers Conference

International Symposium on Circuits and Systems (ISCAS), IEEE, 2021.

Links | BibTeX | Tags: BrainFrame

Siddiqi MA, Tsintzira AA, Digkas G, Siavvas M, Strydis C

Adding Security to Implantable Medical Devices: Can We Afford It? Conference

International Conference on Embedded Wireless Systems and Networks (EWSN), 2021.

Links | BibTeX | Tags: SIMS

2020

Betting JLF, Romano V, Al-Ars Z, Bosman LWJ, Strydis C, De Zeeuw CI

WhiskEras: A New Algorithm for Accurate Whisker Tracking Journal Article

In: Frontiers in Cellular Neuroscience, vol. 14, pp. 372, 2020.

Links | BibTeX | Tags: Other

Panagiotou S, Miedema R, Sidiropoulos H, Smaragdos G, Strydis C, Soudris D

A novel simulator for extended Hodgkin-Huxley neural network Conference

BIBE2020, IEEE, 2020.

Links | BibTeX | Tags: BrainFrame

Siddiqi MA, Doerr C, Strydis C

IMDfence: Architecting a Secure Protocol for Implantable Medical Devices Journal Article

In: IEEE Access, vol. 8, pp. 147948 - 147964, 2020.

Links | BibTeX | Tags: SIMS

Miedema R, Smaragdos G, Negrello M, Al-Ars Z, Möller M, Strydis C

flexHH: A Flexible Hardware Library for Hodgkin-Huxley-Based Neural Simulations Journal Article

In: IEEE Access, vol. 8, 2020.

Links | BibTeX | Tags: BrainFrame

Romano V, Reddington AL, Cazzanelli S, Mazza R, Ma Y, Strydis C, Negrello M, Bosman LWJ, De Zeeuw CI

Functional Convergence of Autonomic and Sensorimotor Processing in the Lateral Cerebellum Journal Article

In: Cell Reports, vol. 32, no. 1, 2020.

Abstract | Links | BibTeX | Tags: Brain Dynamics

Siddiqi MA, Serdijn WA, Strydis C

Zero-Power Defense Done Right: Shielding IMDs from Battery-Depletion Attacks Journal Article

In: Journal of Signal Processing Systems, 2020.

Links | BibTeX | Tags: SIMS

Garcia-Ramirez R, Chacón-Rodríguez A, Strydis C, Rimolo-Donadio R

Pre-Synthesis Evaluation of Digital Bus Micro-Architectures Conference

Conference on PhD Research in Microelectronics and Electronics in Latin America (PRIME-LA), IEEE, 2020.

Links | BibTeX | Tags: BrainFrame

Betting JLF, Romano V, Bosman LWJ, Al-Ars Z, De Zeeuw CI, Strydis C

Stairway to Abstraction: an Iterative Algorithm for Whisker Detection in Video Frames Conference

11th Latin American Symposium on Circuits & Systems (LASCAS), IEEE IEEE , 2020.

Links | BibTeX | Tags: Other

Miedema R, Smaragdos G, Negrello M, Al-Ars Z, Möller M, Strydis C

Synthesis-Free, Flexible and Fast Hardware Library for Biophysically Plausible Neurosimulations - POSTER Conference

International Symposium on Field-Programmable Gate Arrays , ACM/SIGDA 2020.

Abstract | Links | BibTeX | Tags: BrainFrame

de Groot A, van den Boom B JG, van Genderen RM, Coppens J, van Veldhuijzen J, Bos J, Hoedemaker H, Negrello M, Willuhn I, De Zeeuw CI, Hoogland TM

NINscope, a versatile miniscope for multi-region circuit investigations Journal Article

In: eLife, 2020.

Links | BibTeX | Tags: Brain Dynamics

Soloukey Tbalvandany S, Vincent AJPE, Satoer DD, Mastik F, Smits M, Dirven CMF, Strydis C, Bosch JG, van der Steen AFW, De Zeeuw CI, Koekkoek SKE, Kruizinga P

Functional Ultrasound (fUS) During Awake Brain Surgery: The Clinical Potential of Intra-Operative Functional and Vascular Brain Mapping Journal Article

In: Frontiers in Neuroscience, vol. 13, 2020.

Abstract | Links | BibTeX | Tags: CUBE

2019

van der Vlag MA, Smaragdos G, Al-Ars Z, Strydis C

Exploring Complex Brain-Simulation Workloads on Multi-GPU Deployments Journal Article

In: ACM Transactions on Architecture and Code Optimization (TACO), vol. 16, no. 4, 2019.

Abstract | Links | BibTeX | Tags: BrainFrame

Neofytou A, Chatzikonstantis G, Magkanaris I, Smaragdos G, Strydis C, Soudris D

GPU Implementation of Neural-Network Simulations based on Adaptive-Exponential Models Conference

19th International Conference on Bioinformatics and Bioengineering (BIBE) , IEEE 2019.

Abstract | Links | BibTeX | Tags: BrainFrame

Alfaro-Badilla K, Arroyo-Romero A, Salazar-García C, Vega LGL, Espinoza-González J, Hernández- Castro F, Chacón-Rodríguez A, Smaragdos G, Strydis C

Improving the Simulation of Biologically Accurate Neural Networks Using Data Flow HLS Transformations on Heterogeneous SoC-FPGA Platforms Conference

CARLA 2019, Springer, 2019.

Abstract | Links | BibTeX | Tags: BrainFrame

Flierman NA, Ignashchenkova A, Negrello M, Their P, De Zeeuw CI, Badura A

Glissades Are Altered by Lesions to the Oculomotor Vermis but Not by Saccadic Adaptation Journal Article

In: Frontiers in Behavioral Neuroscience , vol. 13, 2019.

Links | BibTeX | Tags: Brain Dynamics

Soloukey Tbalvandany S, Vincent AJPE, Satoer DD, Mastik F, Smits M, Dirven CMF, Strydis C, van der Steen AFW, Bosch JG, De Zeeuw CI, Koekkoek SKE, Kruizinga P

Functional ultrasound (FUS) during awake craniotomy tumor removal: Revolutionizing intra-operative functional brain and tumor mapping Journal Article

In: Stereotactic and Functional Neurosurgery, vol. 97, 2019.

Links | BibTeX | Tags: CUBE

Negrello M, Warnaar P, Romano V, Owens CB, Lindeman S, Iavarone E, Spanke JK, Bosman LWJ, De Zeeuw CI

Quasiperiodic rhythms of the inferior olive. Journal Article

In: PLoS computational biology 2019 , 2019.

Abstract | Links | BibTeX | Tags: Brain Dynamics

Siddiqi MA, Strydis C

IMD security vs. energy: are we tilting at windmills? POSTER Proceedings

ACM Proceedings of the 16th International Conference on Computing Frontiers, 2019.

Abstract | Links | BibTeX | Tags: SIMS

Siddiqi MA, Strydis C

Towards realistic battery-DoS protection of implantable medical devices. Proceedings

ACM Proceedings of the 16th International Conference on Computing Frontiers , 2019.

Links | BibTeX | Tags: SIMS

Vrieler N, Loyola S, Yarden-Rabinowitz Y, Hoogendorp J, Medvedev N, Hoogland TM, De Zeeuw CI, De Schutter E, Yarom Y, Negrello M, Torben-Nielsen B, Uusisaari MY

Variability and directionality of inferior olive neuron dendrites revealed by detailed 3D characterization of an extensive morphological library Journal Article

In: Brain structure & function, vol. 224, 2019.

Abstract | Links | BibTeX | Tags: Brain Dynamics

Ju C, Bosman LWJ, Hoogland TM, Velauthapillai A, Murugesan P, Warnaar P, van Genderen RM, Negrello M, De Zeeuw CI

Neurons of the inferior olive respond to broad classes of sensory input while subject to homeostatic control Journal Article

In: The Journal of Physiology, vol. 597, no. 9, 2019.

Abstract | Links | BibTeX | Tags: Brain Dynamics

Alfaro-Badilla K, Chacón-Rodríguez A, Smaragdos G, Strydis C, Arroyo-Romero A, Espinoza-González J, Salazar-García C

Prototyping a Biologically Plausible Neuron Model on a Heterogeneous CPU-FPGA Board Conference

IEEE 10th Latin American Symposium on Circuits & Systems (LASCAS), 2019.

Links | BibTeX | Tags: BrainFrame

Chatzikonstantis G, Sidiropoulos H, Strydis C, Negrello M, Smaragdos G, De Zeeuw CI, Soudris D

Multinode implementation of an extended Hodgkin–Huxley simulator Journal Article

In: Elsevier Neuroscomputing, 2019.

Links | BibTeX | Tags: Brain Dynamics, BrainFrame

2018

Koekkoek SKE, Soloukey Tbalvandany S, Generowicz BS, Van Hoogstraten WS, Deoude NL, Boele H., Strydis C, Leus G, Bosch JG, Van der Steen AFW, De Zeeuw CI, Kruizinga P

High Frequency Functional Ultrasound in Mice Conference

2018 IEEE International Ultrasonics Symposium (IUS), 2018.

Links | BibTeX | Tags: CUBE

Sidiropoulos H, Chatzikonstantis G, Soudris D, Strydis C

The VINEYARD Framework for Heterogeneous Cloud Applications: The BrainFrame Case Conference

DASIP 2018, 2018.

Links | BibTeX | Tags: BrainFrame

Siddiqi MA, Seepers RM, Hamad M, Prevelakis V, Strydis C

Attack-tree-based Threat Modeling of Medical Implants Workshop

7th International Workshop on Security Proofs for Embedded Systems (PROOFS 2018), 2018.

Links | BibTeX | Tags: SIMS

Zjajo A, Hofmann J, Christiaanse GJ, van Eijk M, Smaragdos G, Strydis C, de Graaf A, Galuzzi C, van Leuken R

A Real-Time Reconfigurable Multichip Architecture for Large-Scale Biophysically Accurate Neuron Simulation Journal Article

In: IEEE transactions on biomedical circuits and systems, 2018.

Links | BibTeX | Tags: BrainFrame

2017

Smaragdos G, Chatzikonstantis G, Kukreja R, Sidiropoulos H, Rodopoulos D, Sourdis I, Al-Ars Z, Kachris C, Soudris D, De Zeeuw CI, Strydis C

BrainFrame: A node-level heterogeneous accelerator platform for neuron simulations Journal Article

In: IOP Journal of Neural Engineering, 2017.

Links | BibTeX | Tags: BrainFrame

Sudhakar SK, Hong S, Raikov I, Publio R, Lang C, Close T, Guo D, Negrello M, De Schutter E

Spatiotemporal network coding of physiological mossy fiber inputs by the cerebellar granular layer Journal Article

In: PLOS Computational Biology, 2017.

Links | BibTeX | Tags: Brain Dynamics

Ma Y, Geethakumari PR, Smaragdos G, Lindeman S, Romano V, Negrello M, Sourdis I, Bosman LWJ, De Zeeuw CI, Al-Ars Z, Strydis C

Towards Real-Time Whisker Tracking in Rodents for Studying Sensorimotor Disorders Conference

SAMOS 2017, 2017.

Links | BibTeX | Tags: Other

Chatzikonstantis G, Jiménez D, Meneses E, Strydis C, Sidiropoulos H, Soudris D

From Knights Corner to Landing: a Case Study Based on a Hodgkin-Huxley Neuron Simulator Conference

International Conference on High Performance Computing, 2017.

Links | BibTeX | Tags: BrainFrame

Stamoulias I, Moller M, Miedema R, Strydis C, Kachris C, Soudris D

High-Performance Hardware Accelerators for Solving Ordinary Differential Equations Proceedings

Proceedings of the 8th International Symposium on Highly Efficient Accelerators and Reconfigurable Technologies, 2017.

Links | BibTeX | Tags: BrainFrame

Seepers RM, Wang W, de Haan G, Sourdis I, Strydis C

Attacks on Heartbeat-Based Security Using Remote Photoplethysmography Journal Article

In: IEEE Journal of Biomedical and Health Informatics, 2017.

Links | BibTeX | Tags: SIMS

Chatzikonstantis G, Rodopoulos D, Strydis C, De Zeeuw CI, Soudris D

Optimizing Extended Hodgkin-Huxley Neuron Model Simulations for a Xeon/Xeon Phi Node Journal Article

In: IEEE Transactions on Parallel and Distributed Systems, 2017.

Links | BibTeX | Tags: BrainFrame

2016

Seepers RM

Implantable Medical Devices: Device security and emergency access PhD Thesis

Erasmus Medical Center, Rotterdam, 2016.

Links | BibTeX | Tags: SIMS

Negrello M, De Schutter E

Models of the Cortico-cerebellar System Book Chapter

In: Neuroscience in the 21st Century, 2016.

Links | BibTeX | Tags: Brain Dynamics

Karapatis A, Seepers RM, van Dongen M, Serdijn WA, Strydis C

Balancing Accuracy, Delay and Battery Autonomy for Pervasive Seizure Detection Conference

International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2016), 2016.

Links | BibTeX | Tags: SIMS

Theodoropoulos D, Chrysos G, Koidis I, Charitopoulos G, Pissadakis E, Varikos A, Pnevmatikatos D, Smaragdos G, Strydis C, Zervos N

mCluster: A Software Framework for Portable Device-Based Volunteer Computing Conference

16th International Symposium on Cluster, Cloud and Grid Computing (CCGrid 2016), 2016.

Links | BibTeX | Tags: BrainFrame

Kachris C, Soudris D, Gaydadjiev G, Nguyen H, Nikolopoulos DS, Bilas A, Morgan N, Strydis C, Tsalidis C, Balafas J, Jimenez-Peris R, Almeida A

The VINEYARD project: Versatile integrated accelerator-based heterogeneous data centres Conference

MOCAST 2016, 2016.

Links | BibTeX | Tags: BrainFrame

Smaragdos G, Chatzikonstantis G, Nomikou S, Rodopoulos D, Sourdis I, Soudris D, De Zeeuw CI, Strydis C

Performance Analysis of Accelerated Biophysically-Meaningful Neuron Simulations Conference

International Symposium on Performance Analysis of Systems and Software, 2016.

Links | BibTeX | Tags: BrainFrame

109 entries « 1 of 3 »